Publications

Graduate work at UC Davis

Rim, E. Y., Garrett, O. D., Howard, A. J., Shim, Y., Li, Y., Van Dyke, J. E., Packer, R. C., Ho, N., Jain, R. S., Stewart, V. J., Dinesh-Kumar, S. P., Notwell, J. H., & Ronald, P. C. (2024). Directed evolution of a plant immune receptor for broad spectrum recognition of pathogen effectors. bioRxiv. https://doi.org/10.1101/2024.09.30.614878

Howard, A. J., Rim, E. Y., Garrett, O. D., Shim, Y., Notwell, J. H., & Ronald, P. C. (2025). Combining Directed Evolution with Machine Learning Enables Accurate Genotype-to-Phenotype Predictions. bioRxiv. https://doi.org/10.1101/2025.01.27.635131

Berlingeri, J., Fuentes, A., Ranario, E., Yun, H., Rim, E. Y., Garrett, O., Howard, A., LaPorte, M.-F., Lo, S., Pauli, D., Hershberger, J., Earles, M., Van Deynze, A., Brummer, E. C., Michelmore, R., Wong, C. Y. S., Magney, T. S., Ronald, P. C., Runcie, D. E., … Diepenbrock, C. H. (2025). Integration of crop modeling and sensing into molecular breeding for nutritional quality and stress tolerance. Theoretical and Applied Genetics, 138(9), 205. https://doi.org/10.1007/s00122-025-04984-y

Undergraduate work at Haverford College

Garrett, O. and Whalen, K. E. (2023). A Bacterial Quorum Sensing Signal is a Potent Inhibitor of de novo Pyrimidine Biosynthesis in the Globally Abundant Emiliania huxleyi. Frontiers in Microbiology. https://doi.org/10.3389/fmicb.2023.1266972

Bifendeh, A. L. N., Hsu, K. K., McBride, C. M., Ferguson, C. M., Baumann, E. R., Capcha-Rodriguez, D., Chen, X., Chery, B., Chihade, M. M., Umpierre, P. D., Evans, T., Everett, C. H., Faheem, S. F., Garrett, O. D., Gottesfeld, A. R., Gupta, I. G., Haas, J. D., Haupt, T. A., Katz, J., … Charkoudian, L. K. (2025). Exploring the compatibility of phosphopantetheinyl transferases with acyl carrier proteins spanning type II polyketide synthase sequence space. Journal of Industrial Microbiology and Biotechnology, 52, kuaf031. https://doi.org/10.1093/jimb/kuaf031